Fusion event
HIV-MALAT1 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
65267710/65500239 (Hg38)
Location type
ncRNA_exonic
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10392/Upstream/55682; hsa-let-7a-2/Downstream/136071;
Nearest cancer related gene
Upstream sequence
TTGGTTAAAAATCACATCAAAAAGCTACTAAAAGGACTGGTGTAATTTAAAAAAAACTAAGGCAGAAGGCTTTTGGAAGAGTTAGAAGAATTTGGAAGGC
Downstream sequence
CTTAAATATAGTAGCTTAGTTTGAAAAATGTGAAGGACTTTCGTAACGGAAGTAATTCAAGATCAAGAGTAATTACCAACTTAATGTTTTTGCATTGGAC
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.