Basic Information
VIS ID
TVIS30001893
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
65287131/65519660 (Hg38)
End
65287131/65519660 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA11H
Nearest miRNA
hsa-mir-10392/Upstream/75103; hsa-let-7a-2/Downstream/116650;
Nearest TSS
ENST00000527297/Upstream/14453; ENST00000529178/Downstream/5417;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/21733, chr11-CpG: 52/Downstream/5436
Nearby gene
SCYL1(No orient, 5417)
Nearest cancer related gene
SCYL1(TSG, No orient, 5417)
Upstream sequence
aggtgttagccactgcgcctggccTGCTCTGTAGtttcttgtgatgtctttatctggttttgttatcagggtactattgataccagcctaatagaatgag
Downstream sequence
ttgggaagtattccctcttcctcttccattttttggaagtgtttgtgaagaattggtattaattctttaaatgtttggtagaagttagtagtgaagaagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate