Basic Information
VIS ID
TVIS30001908
Fusion event
HIV-PACS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.2
Reference genome
End
65939046/66171575 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10392/Upstream/522322; hsa-let-7a-2/Downstream/762859;
Upstream sequence
tctttttttgggggggcggtgtctctatttctggatgactctttagccttctttgtctccttttgaattcgttggtggtttttctctcattccatttttc
Downstream sequence
ttttcttttcttttctttttttgaaacggagtctcgctctgtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaagctccgcctcccagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate