Basic Information
VIS ID
TVIS30001920
Fusion event
HIV-LOC100130987 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
67157791/67390320 (Hg38)
End
67157791/67390320 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA11H
Target gene
LOC100130987
Nearest miRNA
hsa-mir-10392/Upstream/344612; hsa-let-7a-2/Downstream/99925;
Nearest TSS
ENST00000527297/Upstream/14307; ENST00000541132/Downstream/1385;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/16645, chr11-CpG: 74/Downstream/1379
Upstream sequence
TTACACACGTGGACCCGGAAGCCCAGGGGAAGGGGAATACCTTCCAGCTGATGCATCCCCACCTGGCACACAGTCTGGtttttttttttgagatggagtc
Downstream sequence
tcactctgttgccaggctagagtgcagtggcgcgatctcggctcactgcaacctccgcctccgggttcaagcaattctcctgcctcagcctccagagtag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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