Basic Information
VIS ID
TVIS30001937
Fusion event
HIV-INTS4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
77685947/77974901 (Hg38)
End
77685947/77974901 (Hg38)
Orient
-
Location type
Intronic
Target gene
INTS4
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-455-3p ; hsa-mir-197-3p
Nearest miRNA
hsa-mir-10392/Upstream/2639715; hsa-let-7a-2/Downstream/1427121;
Nearest TSS
ENST00000527297/Upstream/36130; ENST00000533697/Downstream/19752;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/153685, chr11-CpG: 36/Downstream/19653
Nearest cancer related gene
INTS4(OG, No orient, 0)
Upstream sequence
tgtgacccaggctggtcttgaactcctgggctcaagtgatcctcctgccttgacctctccaactgtgggattacagacataagccaccgccctcgacagt
Downstream sequence
atcctcacttttccttttttttcctaatatgtccatcttctggtcttctcatttctgagtctagtaatttgagtcttctctctctttcttggtcaatata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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