VISDB Viral Integration Site DataBase

VIS ID

TVIS30001944

Fusion event

HIV-MRE11 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q21

Reference genome

Start

End

94183138/94449972 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-210-3p ; hsa-mir-373-3p ; hsa-mir-375 ; hsa-mir-1-3p ; hsa-mir-34a-5p ; hsa-mir-30a-5p ; hsa-mir-2110 ; hsa-mir-491-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-6870-5p ; hsa-mir-7111-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-3175 ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-1292-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-1296-3p ; hsa-mir-6873-5p ; hsa-mir-6760-5p ; hsa-mir-6077 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-3925-5p ; hsa-mir-665 ; hsa-mir-6874-5p ; hsa-mir-6500-5p ; hsa-mir-7160-5p ; hsa-mir-4633-3p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-6869-5p ; hsa-mir-1200 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6791-3p ; hsa-mir-6829-3p ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-3653-5p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-642a-5p ; hsa-mir-3124-3p ; hsa-mir-130b-5p ; hsa-mir-6796-3p ; hsa-mir-99b-3p ; hsa-mir-99a-3p ; hsa-mir-21-3p ; hsa-mir-3591-3p ; hsa-mir-6512-5p

Nearest miRNA

hsa-mir-10392/Upstream/716208; hsa-let-7a-2/Downstream/16523;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/48290, chr11-CpG: 56/Downstream/43534

Nearest cancer related gene

MRE11(OG, No orient, 0)

Upstream sequence

ttataatctcatgggaccaccactggatatgcagtctgacatcgatcaaaatgttgtatgtggcacatgactacatatttattgcattttctgcattttt

Downstream sequence

gtacttttgctttggtaatgtggtgttttcaaatgaccccctcaacatgtttagtgttcattcctacatgcaaaaaggctgcaatatgacttttggagaa