Basic Information
VIS ID
TVIS30001950
Fusion event
HIV-ALKBH8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
107405545/107534819 (Hg38)
End
107405545/107534819 (Hg38)
Orient
+
Location type
Intronic
Target gene
ALKBH8
Nearest miRNA
hsa-mir-10392/Upstream/3684839; hsa-let-7a-2/Downstream/3812938;
Nearest TSS
ENST00000527297/Upstream/76975; ENST00000529675/Downstream/30699;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/76854, chr11-CpG: 72/Downstream/56274
Upstream sequence
GTTTTTCTTTTTCTGTATCAAATTGACCATTCCTCATCTTTtttttttttctcaataggtttttggggaacaggtggtgtttggttatatggataagttc
Downstream sequence
tttagtggtgatttctgagatttttggtgcacccatcacccgagcagtgtacactgtacccaatgtgtagtcctttacccctcacccccgcaacttttcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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