VISDB Viral Integration Site DataBase

VIS ID

TVIS30001953

Fusion event

HIV-RDX integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q22.3

Reference genome

Start

End

110109720/110238995 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-31-5p ; hsa-mir-409-3p ; hsa-let-7b-5p ; hsa-mir-331-3p ; hsa-let-7e-5p ; hsa-mir-196a-5p ; hsa-mir-196b-5p ; hsa-mir-4768-5p ; hsa-mir-6833-3p ; hsa-mir-6873-3p ; hsa-mir-7110-3p ; hsa-mir-4646-3p ; hsa-mir-4433b-5p ; hsa-mir-6826-3p ; hsa-mir-921 ; hsa-mir-6755-3p ; hsa-mir-1294 ; hsa-mir-6073 ; hsa-mir-202-3p ; hsa-mir-6795-3p ; hsa-mir-7852-3p ; hsa-mir-3174 ; hsa-mir-1244 ; hsa-mir-5683 ; hsa-mir-98-5p ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7a-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-mir-4500 ; hsa-let-7f-5p ; hsa-mir-6887-3p ; hsa-mir-3941 ; hsa-mir-6895-3p ; hsa-mir-6817-3p ; hsa-mir-6758-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4797-5p ; hsa-mir-1251-3p ; hsa-mir-1178-3p ; hsa-mir-3157-5p ; hsa-mir-3934-3p ; hsa-mir-4691-3p

Nearest miRNA

hsa-mir-10392/Upstream/6389015; hsa-let-7a-2/Downstream/1108762;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/145044, chr11-CpG: 147/Downstream/56844

Upstream sequence

gcctgggcgacggagcaagactctgtctcaaaaaaaaaaaaaaaaaacaaaaaaaaCACTTGGAAGGTTTTGAGAGGGTTGGAGAAGAATGACTCTTTGG

Downstream sequence

TTAGGCTTTGGTTAggctcacgcctgtaatcccagcactttcgaagggaaaggtgggaagaccgcttgaggccaggagtttgagaccagtctggtcaaca