Basic Information
VIS ID
TVIS30001958
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
117827659/117956944 (Hg38)
End
117827659/117956944 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA11B
Nearest miRNA
hsa-mir-10392/Upstream/4506856; hsa-let-7a-2/Downstream/687056;
Nearest TSS
ENST00000527297/Upstream/27485; ENST00000531365/Downstream/29404;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/80106, chr11-CpG: 62/Downstream/28979
Nearby gene
TMPRSS13(No orient, 27491)
Upstream sequence
tccaccaaaactattagaatggataaataaattcagtaaagttgcaggatacaaaatcaacatacaaaaatcagtagcatttctatatgccaaaggtaag
Downstream sequence
caacctgaaaaagaaaccaagaaagtaatcccatttacaatagctacaaataaaataaaatacctaggaattaacttaaagaagtgaaagttctctataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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