Basic Information
VIS ID
TVIS30001965
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
118195027/118324312 (Hg38)
End
118195027/118324312 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA11B
Nearest miRNA
hsa-mir-10392/Upstream/4874224; hsa-let-7a-2/Downstream/319688;
Nearest TSS
ENST00000527297/Upstream/12168; ENST00000528540/Downstream/16625;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/170833, chr11-CpG: 22/Downstream/35137
Nearby gene
CD3E(No orient, 8137)
Upstream sequence
AATCCCATATTCCTCCTCCCAAATTTAAAGCCGACCAGAACAACAGGTCTCTTAATTCCCTCTTTAGCTAAGAATTTCTAGCCCTgagaaatgcaaagca
Downstream sequence
aaaccacaatgcgataccaccttactcctgcaagaatgaccataatcaaaaaatcaaaaaaaaaaaaagatgttggcgtggatgtggtgaacagggaaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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