Basic Information
VIS ID
TVIS30001973
Fusion event
HIV-HINFP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
118997760/119127050 (Hg38)
End
118997760/119127050 (Hg38)
Orient
-
Location type
Exonic
Fragile sites / regions
FRA11B
Target gene
HINFP
miRNAs that regulate target gene
hsa-mir-1303 ; hsa-mir-6083 ; hsa-mir-4715-3p ; hsa-mir-411-5p ; hsa-mir-1227-3p ; hsa-mir-6832-5p ; hsa-mir-29a-5p ; hsa-mir-6872-3p ; hsa-mir-483-5p ; hsa-mir-3679-3p ; hsa-mir-2355-5p ; hsa-mir-3613-3p ; hsa-mir-501-5p ; hsa-mir-548p ; hsa-mir-7641 ; hsa-mir-4284 ; hsa-mir-6778-3p ; hsa-mir-4695-3p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-4279 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-576-3p ; hsa-mir-5683 ; hsa-mir-5571-5p ; hsa-mir-3157-5p ; hsa-mir-20a-3p ; hsa-mir-1273g-3p ; hsa-mir-6807-3p ; hsa-mir-217
Nearest miRNA
hsa-mir-10392/Upstream/216263; hsa-let-7a-2/Downstream/185900;
Nearest TSS
ENST00000527297/Upstream/3062; ENST00000529610/Downstream/2810;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/5009, chr11-CpG: 93/Downstream/21883
Upstream sequence
CCTCCTGGGAAAGTTCCCCGAAAGGAGAATCTGTGGCTACAGTGTGAGTGGGGGTCCTGCTCCTTTGTGTGCTCAACCATGGAAAAGTTCTTTGAGCATG
Downstream sequence
TCACTCAGCACCTGCAGCAGCACCTGCATGGCTCTGGggaggaggaggaagaggaagaggaggaTGACCCACTTGGTAAGAGAGCAGGACACAGGAAGGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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