Basic Information
VIS ID
TVIS30001981
Fusion event
HIV-UBASH3B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
122617335/122746627 (Hg38)
End
122617335/122746627 (Hg38)
Orient
+
Location type
Intronic
Target gene
UBASH3B
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-200a-3p ; hsa-mir-491-3p ; hsa-mir-192-3p ; hsa-mir-1227-3p ; hsa-mir-4275 ; hsa-mir-586 ; hsa-mir-3662 ; hsa-mir-455-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-mir-486-5p ; hsa-mir-4797-5p
Nearest miRNA
hsa-let-7a-2/Upstream/594319; hsa-mir-3167/Downstream/634813;
Nearest TSS
ENST00000527297/Upstream/37365; ENST00000533451/Downstream/27469;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/89856, chr11-CpG: 51/Downstream/136051
Upstream sequence
gcctttacctcctacccttgaagatctcagagtctaatggagaagaatgcttccaatgtagtgggaaaaatagacatagaaggaaataattagagataag
Downstream sequence
actggaagggctaatagaagaatggtagagagtgctatgagacttccgaagagagctgctctgctatctgtggtggggaagtcgggaggatttattcatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate