Basic Information
VIS ID
TVIS30001983
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
126997247/127127352 (Hg38)
End
126997247/127127352 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-2/Upstream/138810; hsa-mir-4697/Downstream/1395038;
Nearest TSS
ENST00000527297/Upstream/8026; ENST00000646532/Downstream/432;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/123438, chr11-CpG: 20/Downstream/1324414
Nearby gene
LOC101929473(No orient, 26046)
Upstream sequence
gttcctattttgtgtataccatctgttttctgttgggaccctgactgatGGAACATGTTAGTGTTACTTCATCGCCTTTTCAATGAAAAATGAAAGTACA
Downstream sequence
GGTTTTAAAAGACACAGATTTAAGATGGTCTATTTAACTCTTGCACGATCTGGGATGAAAACTGCTAAGAAAACAAAGCTGGGCCTGCCGAGAGCAGGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate