Basic Information
VIS ID
TVIS30001985
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
127928713/128058818 (Hg38)
End
127928713/128058818 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-2/Upstream/1070276; hsa-mir-4697/Downstream/463572;
Nearest TSS
ENST00000527297/Upstream/787756; ENST00000609911/Downstream/121609;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1054904, chr11-CpG: 20/Downstream/392948
Nearby gene
ETS1(No orient, 399943)
Nearest cancer related gene
ETS1(OG, No orient, 399943)
Upstream sequence
GAATGAGGCACTTTCTAAAAAGGACAAATCTGGTACAGGCTTCAACTCGGGTTCCACGTGACTTAGCTGGGTGGCACGTGCCAGCTCTGTCTTTCCAGAC
Downstream sequence
CCACTTAGTTGTTCTCCCTGAGCCCTGTATTTAGAGATGTAGCTCCAAGCAGTATCTTAGCCACTCATCAACAAAGCAGGAAATATCCTCTCCCCTGCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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