Basic Information
VIS ID
TVIS30001986
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
128253155/128383260 (Hg38)
End
128253155/128383260 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-2/Upstream/1394718; hsa-mir-4697/Downstream/139130;
Nearest TSS
ENST00000527297/Upstream/171823; ENST00000525706/Downstream/80690;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1379346, chr11-CpG: 20/Downstream/68506
Nearby gene
ETS1(No orient, 75501)
Nearest cancer related gene
ETS1(OG, No orient, 75501)
Upstream sequence
ATTTTCCCTTATCATCGCACTGGTTCTTGTATTATCTTGTATTTTCTCAAATGTTTCTGTTTGTTCATGTTTAATAATACAGACATTAGAAATTGATTGG
Downstream sequence
ATACTCAATACTATTGAACTTTGCTTAAGGTACTCATGCACAGACTGGACATTATACTGGAGGTCTCCTAAATGAAAGGGTGTGGAACTCGTTTCTCTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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