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TVIS30001999
Basic Information
VIS ID
TVIS30001999
Fusion event
HIV-PARP11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.32
Reference genome
GRCh37/hg19
Start
3969981/3860815 (Hg38)
End
3969981/3860815 (Hg38)
Orient
-
Location type
Intronic
Target gene
PARP11
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-122-5p
;
hsa-mir-7-5p
;
hsa-mir-26b-5p
;
hsa-mir-1273e
;
hsa-mir-7847-3p
;
hsa-mir-6880-5p
;
hsa-mir-6799-5p
;
hsa-mir-31-5p
;
hsa-mir-6851-5p
;
hsa-mir-3689d
;
hsa-mir-6134
;
hsa-mir-1827
;
hsa-mir-219b-3p
;
hsa-mir-1247-3p
;
hsa-mir-3123
;
hsa-mir-302f
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-7106-5p
;
hsa-mir-6797-5p
;
hsa-mir-1249-5p
;
hsa-mir-765
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6129
;
hsa-mir-6127
;
hsa-mir-4510
;
hsa-mir-4419a
;
hsa-mir-4756-5p
;
hsa-mir-4739
;
hsa-mir-1321
;
hsa-mir-4779
;
hsa-mir-374a-3p
;
hsa-mir-421
;
hsa-mir-4709-5p
;
hsa-mir-136-3p
;
hsa-mir-212-3p
;
hsa-mir-132-3p
Nearest miRNA
hsa-mir-3649/Upstream/2200435; hsa-let-7i/Downstream/3102884;
Nearest TSS
ENST00000382841/Upstream/38841;
ENST00000545163/Downstream/10919;
Nearest CpG islands
None/Target,
chr12-CpG: 104/Upstream/21361
,
chr12-CpG: 38/Downstream/12265
Upstream sequence
tgtccaggctaaagtgcagtgacacatcatagctcactgcaacctcgaactcctagtatcaagtgatccttgtgcttcagcttcctgaggagctgggact
Downstream sequence
acaagcacatgacaccacgtctggccaattaatttttcaattttttcagagacagtcttgccatgttgctcaggctggtcttcaactcctggcctcaagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Active CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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