Basic Information
VIS ID
TVIS30001999
Fusion event
HIV-PARP11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.32
Reference genome
End
3969981/3860815 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-3649/Upstream/2200435; hsa-let-7i/Downstream/3102884;
Upstream sequence
tgtccaggctaaagtgcagtgacacatcatagctcactgcaacctcgaactcctagtatcaagtgatccttgtgcttcagcttcctgaggagctgggact
Downstream sequence
acaagcacatgacaccacgtctggccaattaatttttcaattttttcagagacagtcttgccatgttgctcaggctggtcttcaactcctggcctcaagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate