Basic Information
VIS ID
TVIS30002001
Fusion event
HIV-CD27-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
6550931/6441765 (Hg38)
End
6550931/6441765 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
CD27-AS1
Nearest miRNA
hsa-mir-3649/Upstream/4781385; hsa-let-7i/Downstream/521934;
Nearest TSS
ENST00000382841/Upstream/47860; ENST00000266557/Downstream/3102;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/57409, chr12-CpG: 76/Downstream/28624
Upstream sequence
ATGAGACTCAGGAAGCCTAAGTCAGGAACAGTGATTGCGGACATCTTTGTCCCATAACAGAACTTCCTCCTAAGGAAAGGTCTTGCAGAGACTGGTCCTG
Downstream sequence
CTGAGCGCTTTAACAGGTTATTGATTCATAAAAATTGGAGAAAAAAGACaaagtctgccacacctaacagccttctgtttagagctggtttagaggaaac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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