Basic Information
VIS ID
TVIS30002004
Fusion event
HIV-A2M integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
9231165/9078569 (Hg38)
End
9231165/9078569 (Hg38)
Orient
+
Location type
Intronic
Target gene
A2M
miRNAs that regulate target gene
hsa-mir-128-3p ; hsa-mir-122-5p ; hsa-mir-98-5p
Nearest miRNA
hsa-mir-141/Upstream/2114378; hsa-let-7i/Downstream/160898;
Nearest TSS
ENST00000382841/Upstream/9491; ENST00000427111/Downstream/1829;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/13450, chr12-CpG: 18/Downstream/161294
Upstream sequence
ttgttattgtaaatagtgccgcgataaacatacatgtgcatgtgtcattatagtagaatgatttatattcctttgggtatatacccagtaatgggattac
Downstream sequence
taggtcaaatggtatttctggttctagatccttgaagaatcgccatactgtcttccacaatggttgaacaaatttacattcAAGTAATTTGAATGTACTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate