Basic Information
VIS ID
TVIS30002006
Fusion event
HIV-LOC374443 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
9806569/9653973 (Hg38)
End
9806569/9653973 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC374443
Nearest miRNA
hsa-mir-1244-3/Upstream/414422; hsa-let-7i/Downstream/2457979;
Nearest TSS
ENST00000382841/Upstream/5964; ENST00000487752/Downstream/10996;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/5717, chr12-CpG: 37/Downstream/457503
Upstream sequence
ttaagctccattatgtgcctgtcactgtgtgaaatgcttgaattacatcagcaaacaaaatacacacaaaagaattcctgccctttggaacttatattcc
Downstream sequence
agcagaaaaacacaagtaaaaataaataagggtggaggtataacaggttgcaataggttgacaaaactaagccttcttaggaaggtgacatttcagcaac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate