Basic Information
VIS ID
TVIS30002016
Fusion event
HIV-APOLD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
12884649/12731715 (Hg38)
End
12884649/12731715 (Hg38)
Orient
+
Location type
Intronic
Target gene
APOLD1
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-92b-3p ; hsa-mir-324-3p ; hsa-mir-92a-3p ; hsa-mir-1273e ; hsa-mir-298 ; hsa-mir-4785 ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-6840-3p ; hsa-mir-4649-3p ; hsa-mir-665 ; hsa-mir-4433a-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-302f ; hsa-mir-4298 ; hsa-mir-1302 ; hsa-mir-4314 ; hsa-mir-6506-5p ; hsa-mir-6815-3p ; hsa-mir-619-5p ; hsa-mir-4646-5p ; hsa-mir-3192-5p ; hsa-mir-204-3p ; hsa-mir-622
Nearest miRNA
hsa-mir-1244-3/Upstream/619679; hsa-let-7i/Downstream/32934;
Nearest TSS
ENST00000382841/Upstream/5689; ENST00000356591/Downstream/53892;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/5647, chr12-CpG: 71/Downstream/55064
Upstream sequence
gatatgaacacagttatcggaaaagaaaatatgaaaggcttttaataaatgaaaacatgctcaatTGTAGACTATTGGGATATAAACCATATACAGAATA
Downstream sequence
TATAAATATAGGGAAATTGAGGCACTCAGATACAAAGACGGCCATTATTCTTTCTTGACAGTTTAATCCTTGCTTCCCTCCTTTCTACCTAAGGGTTAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate