Basic Information
VIS ID
TVIS30002024
Fusion event
HIV-AEBP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
19665589/19512655 (Hg38)
End
19665589/19512655 (Hg38)
Orient
-
Location type
Intronic
Target gene
AEBP2
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-103a-3p ; hsa-mir-101-3p ; hsa-mir-484 ; hsa-mir-328-3p ; hsa-let-7e-5p ; hsa-mir-3686 ; hsa-mir-4775 ; hsa-mir-3607-3p ; hsa-mir-4778-5p ; hsa-mir-5580-3p ; hsa-mir-590-3p
Nearest miRNA
hsa-mir-1244-3/Upstream/1839261; hsa-let-7i/Downstream/4699766;
Nearest TSS
ENST00000382841/Upstream/12526; ENST00000535764/Downstream/262796;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/71904, chr12-CpG: 24/Downstream/428548
Upstream sequence
taaaaaGAAATTACATTTTACAACGTTTTGAGGTTGTCAGGATTAAAGAGATAATCTGAAAGGTCTTACACTATCAGGTTCACGTTTTACGCTTCAAAAC
Downstream sequence
TTAAGCCCCCCCTCTTTTTTTTTTTgctggaggcggtggctcacacctgtaatcccagcactttgggaggctgggggaggccggcagttcgagaccagcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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