Basic Information
VIS ID
TVIS30002025
Fusion event
HIV-ST8SIA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
22482108/22329174 (Hg38)
End
22482108/22329174 (Hg38)
Orient
+
Location type
Intronic
Target gene
ST8SIA1
Nearest miRNA
hsa-mir-1244-3/Upstream/4655780; hsa-let-7i/Downstream/1883247;
Nearest TSS
ENST00000382841/Upstream/41980; ENST00000508615/Downstream/4989;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/282519, chr12-CpG: 102/Downstream/4727
Upstream sequence
ctatttttaattattccaatattagcaaagaataaaaagaaaaactgatgaaagatgacattggagaagtaatcagagccaaatcatgagaGAGATGTAT
Downstream sequence
ACAGCATTGCTTCATTTATCCCAAATGAgcagggaacaagcatgaggtttagaattaaatagctccaggttggaaatcaaactccatcattttgttcatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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