Basic Information
VIS ID
TVIS30002028
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
28029375/27876442 (Hg38)
End
28029375/27876442 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/2002363; hsa-let-7i/Downstream/14447258;
Nearest TSS
ENST00000382841/Upstream/75734; ENST00000538113/Downstream/82075;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/95637, chr12-CpG: 87/Downstream/93648
Nearby gene
KLHL42(No orient, 73402)
Upstream sequence
gttttcccagtaccatttattgaaaagactaaattgaatggtcttggcacctgtgtcaaaaatcatttgaccatgtcatgtgggtttatttctgggtctc
Downstream sequence
aattctgttccattggtctatatgtctgtctttatgtcagtaccacattgtttgataactttgtattaagttttgaaaaactttgtagtaagtgagtttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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