Basic Information
VIS ID
TVIS30002029
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
28186999/28034066 (Hg38)
End
28186999/28034066 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/2159987; hsa-let-7i/Downstream/14289634;
Nearest TSS
ENST00000382841/Upstream/61361; ENST00000544780/Downstream/99183;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/58424, chr12-CpG: 70/Downstream/156290
Nearby gene
PTHLH(No orient, 62083)
Upstream sequence
TTTTAATGGCTAGTAATTGGGCTATTAGTAGGACCATGATGAAAACAGGGAGGGGGCTTGTTTTAAATAGTTGCATGTAAACACACACTAGAACTTTCAT
Downstream sequence
GTTACTTAAGGTCACATTGCTGGCTGAACAGATCACAGATACTAAAAACCACTCCTgtttactgagtgaccatgttctacacaatttatatttataactc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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