Basic Information
VIS ID
TVIS30002036
Fusion event
HIV-PPHLN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q12
Reference genome
GRCh37/hg19
Start
42801381/42407579 (Hg38)
End
42801381/42407579 (Hg38)
Orient
+
Location type
Intronic
Target gene
PPHLN1
miRNAs that regulate target gene
hsa-mir-409-3p
Nearest miRNA
hsa-mir-1244-3/Upstream/83720; hsa-let-7i/Downstream/4780233;
Nearest TSS
ENST00000382841/Upstream/20189; ENST00000624028/Downstream/35070;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/81262, chr12-CpG: 165/Downstream/75273
Upstream sequence
ttagtctccaagtcacataccatcacttctgccttgttctgtccattagaagtgagtcactaagcccagcccaaaatcaactggaaggaattacacaagg
Downstream sequence
aagtaaatgtagtgattcctcagtatccgtggggaattggtttcaggacacctcagagataccaaaatccatggatgctcaaatcccttatgtaaaatgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate