Basic Information
VIS ID
TVIS30002039
Fusion event
HIV-ARID2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q12
Reference genome
GRCh37/hg19
Start
46159455/45765672 (Hg38)
End
46159455/45765672 (Hg38)
Orient
-
Location type
Intronic
Target gene
ARID2
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-155-5p ; hsa-mir-424-3p ; hsa-mir-15b-5p ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-374a-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-4474-3p ; hsa-mir-222-5p ; hsa-mir-4501 ; hsa-mir-545-5p ; hsa-mir-802 ; hsa-mir-203a-3p ; hsa-mir-194-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-127-5p ; hsa-mir-6071 ; hsa-mir-7160-5p ; hsa-mir-8077 ; hsa-mir-4663 ; hsa-mir-873-3p ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-3692-5p ; hsa-mir-93-3p ; hsa-mir-4329 ; hsa-mir-6728-3p ; hsa-mir-4499 ; hsa-mir-5584-3p ; hsa-mir-4277
Nearest miRNA
hsa-mir-1244-3/Upstream/3441813; hsa-let-7i/Downstream/1422140;
Nearest TSS
ENST00000382841/Upstream/35756; ENST00000480128/Downstream/71089;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/35000, chr12-CpG: 115/Downstream/224106
Nearest cancer related gene
ARID2(TSG, No orient, 0)
Upstream sequence
cttcatcaagtatgtgattcgcagatattttcacataaactgtgatttgtctttttattctctCTTCAGTAAGCATTATTGAGATATATAATTGATGTAC
Downstream sequence
AGTAAACTGAAAATGTTCTTTGTACAGTTTAGCTTTTTGAATTGTATAaagtatacaatttggtaggtttcgacatgtgtatcctgtgaaactattaaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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