VISDB Viral Integration Site DataBase

VIS ID

TVIS30002043

Fusion event

HIV-RACGAP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.12

Reference genome

Start

End

50399115/50005332 (Hg38)

Orient

-

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-221-3p ; hsa-let-7e-5p ; hsa-mir-208a-5p ; hsa-mir-576-3p ; hsa-mir-208b-5p ; hsa-mir-590-3p ; hsa-mir-484 ; hsa-mir-3119 ; hsa-mir-3155a ; hsa-mir-3155b ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-24-2-5p ; hsa-mir-24-1-5p ; hsa-mir-141-5p ; hsa-mir-3651 ; hsa-mir-140-3p ; hsa-mir-7159-3p ; hsa-mir-4503 ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-556-5p ; hsa-mir-382-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-421 ; hsa-mir-552-5p ; hsa-mir-3658 ; hsa-mir-302c-5p ; hsa-mir-4775 ; hsa-mir-3653-3p ; hsa-mir-6507-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-943 ; hsa-mir-3137 ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-1183 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-3662 ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-519d-3p ; hsa-mir-106a-5p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-4295 ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-892a ; hsa-mir-3657 ; hsa-mir-4669 ; hsa-mir-4468 ; hsa-mir-6501-3p ; hsa-mir-2278 ; hsa-mir-5683 ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-7158-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-122-5p ; hsa-mir-143-5p ; hsa-mir-215-3p ; hsa-mir-3135b ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-4695-3p ; hsa-mir-500b-3p ; hsa-mir-504-3p ; hsa-mir-564 ; hsa-mir-5693 ; hsa-mir-5698 ; hsa-mir-6499-3p ; hsa-mir-6773-3p ; hsa-mir-6879-3p ; hsa-mir-891a-3p

Nearest miRNA

hsa-mir-1244-3/Upstream/1233295; hsa-let-7i/Downstream/228810;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/37463, chr12-CpG: 41/Downstream/19820

Upstream sequence

AACAACAGATGCAGTTCCTCCACCTTTTGTTCCCAGCATTGCTGCTGGATGGTTGGCCTCTGTTGAGAAAAGCCAGAGCTGATTTTTGCTCCTCGCTTAG

Downstream sequence

TTGAATGCTGCCAGATGTGTCACACATGAGCATCTCTCGAATCAGCTGAATCTGTCGTTCCTACAGACCAAAGCAAAGTAAAACATCATAACTAGCCAGG