Basic Information
VIS ID
TVIS30002048
Fusion event
HIV-DIP2B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
50957549/50563766 (Hg38)
End
50957549/50563766 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12A
Target gene
DIP2B
Nearest miRNA
hsa-mir-1244-3/Upstream/329554; hsa-let-7i/Downstream/2335123;
Nearest TSS
ENST00000382841/Upstream/58659; ENST00000546719/Downstream/77039;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/58385, chr12-CpG: 139/Downstream/199949
Upstream sequence
taaactttttatgggtatggggtgtcactatattgcccaggctgctctcaaactcctaggctcaagcaagcctgccacctttccctcccaaagtgttggg
Downstream sequence
tttacaggcataagccaccttgcccagccTAATTTTTTTTTTTTTAAAAGCTCATTCTGTGTACCTTAACTTCTTTGATCCTTCATTCTTGAAATTTTAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate