VISDB Viral Integration Site DataBase

VIS ID

TVIS30002051

Fusion event

HIV-ACVR1B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.13

Reference genome

Start

End

52348049/51954265 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-210-3p ; hsa-mir-24-3p ; hsa-mir-7-5p ; hsa-mir-182-5p ; hsa-mir-197-3p ; hsa-mir-26b-5p ; hsa-mir-15a-5p ; hsa-let-7c-5p ; hsa-let-7a-5p ; hsa-mir-371a-5p ; hsa-mir-3121-3p ; hsa-mir-4266 ; hsa-mir-4695-5p ; hsa-mir-4779 ; hsa-mir-6888-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-4709-3p ; hsa-mir-4796-3p ; hsa-mir-5689 ; hsa-mir-3680-3p ; hsa-mir-199a-5p ; hsa-mir-135b-5p ; hsa-mir-541-5p ; hsa-mir-7106-5p ; hsa-mir-6739-5p ; hsa-mir-3153 ; hsa-mir-6733-5p ; hsa-mir-765 ; hsa-mir-4479 ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-6754-5p ; hsa-mir-7113-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-6783-5p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-518f-3p ; hsa-mir-518d-3p ; hsa-mir-518c-3p ; hsa-mir-518b ; hsa-mir-518a-3p ; hsa-mir-3120-5p ; hsa-mir-6872-3p ; hsa-mir-4724-5p ; hsa-mir-4699-3p ; hsa-mir-448 ; hsa-mir-153-3p ; hsa-mir-372-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6501-3p ; hsa-mir-342-3p ; hsa-mir-603 ; hsa-mir-8485

Nearest miRNA

hsa-mir-1244-3/Upstream/1720053; hsa-let-7i/Downstream/944624;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/2146, chr12-CpG: 138/Downstream/52418

Upstream sequence

AGCTCTGATGCCTGATACTTGGACTTGATGTGAGGGGCAGTAAGGGATAGGTGTTTCTATTAATTAATGAATTAACTAGGACTTAGTAAAAGGCCAGTGA

Downstream sequence

TAAGGAGAATGAGTTTCAGTTAGAAATAGCATCCGTTTGATAGGTGTACATGTTTTAAGGCCTGGCTTTGGAATTTTCACATTTAAAAATGTAAAATTGA