VISDB Viral Integration Site DataBase

VIS ID

TVIS30002061

Fusion event

HIV-STAT2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.3

Reference genome

Start

End

56748494/56354710 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-125a-5p ; hsa-let-7c-5p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-3190-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-3613-3p ; hsa-mir-4668-3p ; hsa-mir-548c-3p ; hsa-mir-1273e ; hsa-mir-4266 ; hsa-mir-6894-5p ; hsa-mir-7160-5p ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-7162-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-4482-5p ; hsa-mir-3130-5p ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-1228-3p ; hsa-mir-25-3p ; hsa-mir-25-5p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-377-5p ; hsa-mir-4325 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-7703 ; hsa-mir-92a-3p ; hsa-mir-92b-3p

Nearest miRNA

hsa-mir-1244-3/Upstream/2017396; hsa-let-7i/Downstream/839794;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/20498, chr12-CpG: 37/Downstream/5367

Upstream sequence

CCTCCTGGGAAAGAGATAATGTGAGTGTTGAGCATCTCTCCCTTTCACCCTCCACCACCCAACTGGGGATGAAGAAACAAAGAAGCCAGCGCTAGAGGAC

Downstream sequence

CAGGGTCCCCACATCCCTCATTTTTCCAGGTCCTTGTTGCCCACATGTTCTGTCCTCTGTCTCCCACCTTTCTCCTTTTGTCCAGTTCATTGAGAGTTTC