Basic Information
VIS ID
TVIS30002064
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
61179602/60785821 (Hg38)
End
61179602/60785821 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1228/Upstream/2961129; hsa-let-7i/Downstream/1474538;
Nearest TSS
ENST00000382841/Upstream/692957; ENST00000546718/Downstream/1041412;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1189095, chr12-CpG: 117/Downstream/1405166
Nearby gene
TAFA2(No orient, 922427)
Upstream sequence
gcagcgaagctgacagcgcagccttcagtctgtggctgaaggctcaagagcccccagaaaaccactggtgcaagtccaagagtccaaaggctaagtaacc
Downstream sequence
tgatataatgtccaagggtaggaggaatgtagggaaacatacagccattccaccttctactgtctgttttgtgctagccacactggcagctgattggata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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