VISDB Viral Integration Site DataBase

VIS ID

TVIS30002066

Fusion event

HIV-USP15 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q14.1

Reference genome

Start

End

62754555/62360774 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-149-5p ; hsa-mir-222-3p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-545-3p ; hsa-mir-6838-5p ; hsa-mir-33a-3p ; hsa-mir-105-5p ; hsa-mir-607 ; hsa-mir-548e-5p ; hsa-mir-3148 ; hsa-mir-4668-5p ; hsa-mir-5584-5p ; hsa-mir-7853-5p ; hsa-mir-3671 ; hsa-mir-548c-3p ; hsa-mir-5089-5p ; hsa-mir-627-5p ; hsa-mir-4713-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-924 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-6078 ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-4668-3p ; hsa-mir-541-5p

Nearest miRNA

hsa-mir-1228/Upstream/100320; hsa-let-7i/Downstream/242912;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/99878, chr12-CpG: 50/Downstream/105829

Upstream sequence

TTTTCATCGTAAAAGGAAAAACCTCACTTCTGAGACACAAAACACTTTTTAAAAAATAGTTTAGGATCTTATATTTGTTCTGATAAACTGAGAACGTGGC

Downstream sequence

TAATGAAAAATTTAAAACTACTACTTTCTAGGTCAGGTTTTCATCCTAATCCAGGATGTTAAactcaattatgtgagttcctttcatgttatgtgccaga