Basic Information
VIS ID
TVIS30002069
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
64128787/63735007 (Hg38)
End
64128787/63735007 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/1131238; hsa-mir-10527/Downstream/88656;
Nearest TSS
ENST00000382841/Upstream/66068; ENST00000536219/Downstream/44796;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/65704, chr12-CpG: 80/Downstream/44661
Nearby gene
RXYLT1(No orient, 44796)
Upstream sequence
ATATTAGCTATAATCTATAGCTATCAAAAAATTATCTAAGAAGTATAAATGCCCAAAAGGTTTGTGTCAGTTTGCAAGACAATAGTGTATTACTCTATGT
Downstream sequence
ATTTACTTAtttctttttgagaaggagtctcactctgttgctcaggctggagtgcagtggcacgactttggctcactgcaacctctgcctcccaggttca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate