Basic Information
VIS ID
TVIS30002071
Fusion event
HIV-LINC02384 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q15
Reference genome
GRCh37/hg19
Start
68832802/68439022 (Hg38)
End
68832802/68439022 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC02384
Nearest miRNA
hsa-let-7i/Upstream/2187865; hsa-mir-1178/Downstream/834135;
Nearest TSS
ENST00000382841/Upstream/6368; ENST00000489473/Downstream/3194;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/106327, chr12-CpG: 132/Downstream/171418
Upstream sequence
AACATGTCCAGATCACTCTGTTTGTATGCTGGAACTTAGTCGGACTAGCAGGCTATTTTTTAAATCCTTTTTCCTAGCTTGTATTCTCCACATTTTAAGG
Downstream sequence
TAAGTGTCAATACAAACGTTAAATTAGTATGCATTGCAGTTCTTGCTTTGAAATATAGAATAAATCCTTTAGAGAAAGAGATTGCCGTGCTTAAAGACTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate