Basic Information
VIS ID
TVIS30002078
Fusion event
HIV-LINC02391 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q22
Reference genome
GRCh37/hg19
Start
92656479/92262703 (Hg38)
End
92656479/92262703 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
LINC02391
Nearest miRNA
hsa-let-7i/Upstream/5517554; hsa-mir-1178/Downstream/2299086;
Nearest TSS
ENST00000382841/Upstream/116256; ENST00000508671/Downstream/101129;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/116146, chr12-CpG: 133/Downstream/665863
Nearby gene
BTG1(No orient, 116806)
Upstream sequence
cctggaggcagaggttgcagtgagctgagatcatgccacAAAAAAAAAAAAAAAAAAAaaaagcactctatcaaattaacctgatttcttttttggactg
Downstream sequence
tcacatatatatcaggaaatgatcacagttatgtcacacatggatgttagcatcaataatcaaatttggtaaagtctttcatgatgtacttgtggataac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate