VISDB Viral Integration Site DataBase

VIS ID

TVIS30002082

Fusion event

HIV-HCFC2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q23.3

Reference genome

Start

End

104487415/104093637 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-376a-3p ; hsa-mir-376b-3p ; hsa-mir-548aw ; hsa-mir-1468-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-302f ; hsa-mir-548x-5p ; hsa-mir-548aj-5p ; hsa-mir-4756-3p ; hsa-mir-449b-3p ; hsa-mir-513b-3p ; hsa-mir-606 ; hsa-mir-2054 ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-8068 ; hsa-mir-6853-3p ; hsa-mir-1206 ; hsa-mir-103b ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-497-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-103a-3p ; hsa-mir-6838-5p ; hsa-mir-107 ; hsa-mir-4446-5p ; hsa-mir-4755-5p ; hsa-mir-5006-3p ; hsa-mir-607 ; hsa-mir-4753-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-3124-3p ; hsa-mir-4772-3p ; hsa-mir-2276-3p ; hsa-mir-6832-3p ; hsa-mir-130b-5p ; hsa-mir-330-3p ; hsa-mir-3613-3p ; hsa-mir-216b-5p ; hsa-mir-548c-3p

Nearest miRNA

hsa-let-7i/Upstream/163082; hsa-mir-1178/Downstream/497996;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/28328, chr12-CpG: 149/Downstream/43759

Upstream sequence

GGTGGATATGCTAAGGAAAAATGAAGGTATATGGATGACATTTTAAACTAAAGCTTTTTATAAAATCGGTGGGGAATTTAATAGTCATTGAAAAAGTAAA

Downstream sequence

TGTTGTACAGTTTTGATCCATTTTCCTAATAGCAAAAAACTGCCATATTCAACCTGGTTAGAATAATGTTAAAATACCAAGTAAGCACTTACCTGAACAG