Basic Information
VIS ID
TVIS30002085
Fusion event
HIV-CORO1C integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.11
Reference genome
GRCh37/hg19
Start
109053059/108659283 (Hg38)
End
109053059/108659283 (Hg38)
Orient
+
Location type
Intronic
Target gene
CORO1C
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-375 ; hsa-mir-125a-5p ; hsa-mir-30a-5p ; hsa-mir-1301-3p ; hsa-mir-218-5p ; hsa-mir-6124 ; hsa-mir-651-3p ; hsa-mir-514b-3p ; hsa-mir-6079 ; hsa-mir-514a-3p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-671-5p ; hsa-mir-6828-5p ; hsa-mir-4766-5p ; hsa-mir-146a-3p ; hsa-mir-6513-3p ; hsa-mir-4694-3p ; hsa-mir-6807-5p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-6751-3p ; hsa-mir-1199-5p
Nearest miRNA
hsa-let-7i/Upstream/23413; hsa-mir-1178/Downstream/177625;
Nearest TSS
ENST00000382841/Upstream/451; ENST00000548052/Downstream/37119;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/67232, chr12-CpG: 115/Downstream/71578
Upstream sequence
GGGTTCATATGAAACAATCAACCAAACAAAAACAAAGAACCACACCAAAACAGAACCCTATTTTCTTTAAAGAGTTAACTGGGCTGGTAGACCCAAGTGA
Downstream sequence
CTTCAAGTTTCCCTTTCTAGTAAAACAAGCATCAGGGTGTTGCTGCCAGCTTTGGGAGACCCCTATTAGGCAAATACGCTCCTTCCTTTTAAAGAAAACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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