Basic Information
VIS ID
TVIS30002088
Fusion event
HIV-C12orf76 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.11
Reference genome
GRCh37/hg19
Start
110479916/110042111 (Hg38)
End
110479916/110042111 (Hg38)
Orient
-
Location type
UTR3
Fragile sites / regions
FRA12E
Target gene
C12orf76
miRNAs that regulate target gene
hsa-mir-29c-3p ; hsa-mir-10a-5p
Nearest miRNA
hsa-let-7i/Upstream/208675; hsa-mir-1178/Downstream/1262031;
Nearest TSS
ENST00000382841/Upstream/5896; ENST00000549009/Downstream/6411;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/42265, chr12-CpG: 42/Downstream/6167
Upstream sequence
TTTCAAGCATTAATGATGAGTTCTTTACAGTGTGGTTCTTACAGGCACTCACAAGGTTACCATGTTTTCTTTCTCATGAACACTCCATCTTTACACTGAC
Downstream sequence
CTTTGGAGCTTTCAGGTCTTACTTTTAACAAGTACAGTCAGAAACACTGAGAAGCGGACTCAGGGGCCAATTATTTGCGCTACAGTGTTAGGAAAAAATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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