VISDB Viral Integration Site DataBase

VIS ID

TVIS30002092

Fusion event

HIV-PPP1CC integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.11

Reference genome

Start

End

111176691/110738886 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-940 ; hsa-mir-185-5p ; hsa-mir-15b-5p ; hsa-mir-92a-3p ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-582-5p ; hsa-mir-466 ; hsa-mir-4643 ; hsa-mir-190a-3p ; hsa-mir-101-3p ; hsa-mir-493-3p ; hsa-mir-302a-5p ; hsa-mir-6504-3p ; hsa-mir-154-5p ; hsa-mir-5684 ; hsa-mir-323a-3p ; hsa-mir-4789-3p ; hsa-mir-548c-3p ; hsa-mir-4279 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-8075 ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-4699-5p ; hsa-mir-4251 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-1914-5p ; hsa-mir-3121-3p ; hsa-mir-218-5p ; hsa-mir-6882-5p ; hsa-mir-510-3p ; hsa-mir-3148 ; hsa-mir-494-3p ; hsa-mir-6832-3p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-6859-5p ; hsa-mir-3125 ; hsa-mir-3916 ; hsa-mir-548e-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-34a-5p

Nearest miRNA

hsa-let-7i/Upstream/905450; hsa-mir-1178/Downstream/565256;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/49344, chr12-CpG: 97/Downstream/3315

Upstream sequence

GCGGGCACAAGGAGAGTAATCCTTTTTCAATGCTGTGGTTTAAAAAAGGACTCCTGCAAGCTGCAGATCATCTGTCTCCAACAGAGCTTTCCCACCTTGC

Downstream sequence

CTAGGAGGAGAGGAAGTGGGCATATGACCAACATACTGATGGGAAAGGAAGGGCAAGGGCTCACATCAGAGTTCTTATCAATGAGGGAATTAGAAACTGA