Basic Information
VIS ID
TVIS30002099
Fusion event
HIV-OAS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
113350982/112913177 (Hg38)
End
113350982/112913177 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12E ; FRA12D
Target gene
OAS1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-let-7i/Upstream/218001; hsa-mir-1178/Downstream/245936;
Nearest TSS
ENST00000382841/Upstream/6125; ENST00000553152/Downstream/3440;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/337452, chr12-CpG: 37/Downstream/25203
Upstream sequence
agtaaactctctcagttattgtttgtctgaaaatgtcatgcttttgccttcattgttgaagggtgcttttgctgggtggtcatttcagtatattgaatat
Downstream sequence
atcattccatcttccagtgtcatcattaaaaagtcagttgccagtctaactgcagctcttttataagtaacctgtcttattcttctggctgcatgtaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate