Fusion event
HIV-DDX54 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
113620601/113182796 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-let-7i/Upstream/23619; hsa-mir-1178/Downstream/108727;
Upstream sequence
acaggcacatgccaccagcccggctaatttttgtattttcagtagagatggggtttcaccatgttggccaggccggtctcaaactcccgacctcaagtga
Downstream sequence
tccgctcaccttggcctcccaaagtgctcggattacaggcatgagccaccacgcccagcctcctttggtcttttcaacactttttttttttttttgagac
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.