Basic Information
VIS ID
TVIS30002121
Fusion event
HIV-LOC101928346 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
GRCh37/hg19
Start
122023228/121585323 (Hg38)
End
122023228/121585323 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
LOC101928346
Nearest miRNA
hsa-let-7i/Upstream/140971; hsa-mir-3612/Downstream/1110584;
Nearest TSS
ENST00000382841/Upstream/4308; ENST00000611718/Downstream/41227;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/4641, chr12-CpG: 116/Downstream/40948
Nearby gene
KDM2B(No orient, 4308)
Upstream sequence
ggaggctgaggcacaagaaccgcttgaacccaggaggcagaggttgcagtgagccaagatcattcactgcactccagcctgggtgacatcccgagactcc
Downstream sequence
gtctccaaaccaaaacgaaaCTAAACAACATGCAGAATACTAATAATACTAAGTTGTGCGGACCATGTAAGGAAACCAAAAGGGTTATGTCTGTATCTAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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