Basic Information
VIS ID
TVIS30002122
Fusion event
HIV-LOC101928346 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
GRCh37/hg19
Start
122025098/121587193 (Hg38)
End
122025098/121587193 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
LOC101928346
Nearest miRNA
hsa-let-7i/Upstream/142841; hsa-mir-3612/Downstream/1108714;
Nearest TSS
ENST00000382841/Upstream/6178; ENST00000611718/Downstream/39357;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/6511, chr12-CpG: 116/Downstream/39078
Nearby gene
KDM2B(No orient, 6178)
Upstream sequence
ttgcagtgagccaaaatcatgccactgcactccagcatgggtgactaagcaagtctccatctcaaaaaaaaaaaagaaagaaagaaagaaaTATACACAC
Downstream sequence
CATCTCTCATCTTGCCTTTCACTGACTATAATCTTGGACCCCTTTCCACGTGCTATCTGTAGAACTGCCATTCTAAAGTATTATTTAggctgggcgcggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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