Basic Information
VIS ID
TVIS30002128
Fusion event
HIV-RSRC2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
GRCh37/hg19
Start
123007430/122522883 (Hg38)
End
123007430/122522883 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
RSRC2
miRNAs that regulate target gene
hsa-mir-186-5p ; hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-197-3p ; hsa-mir-552-5p ; hsa-mir-6839-3p ; hsa-mir-4540 ; hsa-mir-6868-3p ; hsa-mir-6793-5p ; hsa-mir-629-5p ; hsa-mir-4795-5p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-6838-3p ; hsa-mir-649 ; hsa-mir-490-3p ; hsa-mir-1228-3p ; hsa-mir-6884-3p
Nearest miRNA
hsa-let-7i/Upstream/1078531; hsa-mir-3612/Downstream/173024;
Nearest TSS
ENST00000382841/Upstream/441; ENST00000535410/Downstream/873;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/21786, chr12-CpG: 44/Downstream/3831
Upstream sequence
AGAAAATTAACTTACCTAAGTGAGAACCTCATCTTAATGTCATTAACCCTCTTTAATGAAAACAGCCCCTTGGCACAGTGCTGCTGCAAAATATGGTCTG
Downstream sequence
CCTCTCCTCACATGTGCTCTGGGCTATGAAAACATTAAGTTGTTTCTGCTTTAAAGCATTTTATAAGTAATTATTACAATATAAATTTTACAAGTTTCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate