VISDB Viral Integration Site DataBase

VIS ID

TVIS30002130

Fusion event

HIV-VPS37B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

123379208/122894661 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-378a-3p ; hsa-mir-34a-5p ; hsa-mir-940 ; hsa-mir-652-3p ; hsa-mir-331-3p ; hsa-mir-3928-3p ; hsa-mir-6724-5p ; hsa-mir-6773-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-765 ; hsa-mir-4731-5p ; hsa-mir-4487 ; hsa-mir-6746-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-3937 ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-708-5p ; hsa-mir-3139 ; hsa-mir-28-5p ; hsa-mir-296-5p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-422a ; hsa-mir-378h ; hsa-mir-378i ; hsa-mir-378f ; hsa-mir-378e ; hsa-mir-378d ; hsa-mir-378c ; hsa-mir-378b ; hsa-mir-4638-3p ; hsa-mir-518c-5p ; hsa-mir-1825 ; hsa-mir-194-3p ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-3665 ; hsa-mir-3934-5p ; hsa-mir-4449 ; hsa-mir-4690-5p ; hsa-mir-6165 ; hsa-mir-6510-5p ; hsa-mir-6765-3p ; hsa-mir-6804-3p ; hsa-mir-6852-5p ; hsa-mir-7851-3p

Nearest miRNA

hsa-let-7i/Upstream/185237; hsa-mir-3612/Downstream/116006;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/27290, chr12-CpG: 55/Downstream/1125

Upstream sequence

AGCACTGTAGGCGTGGGAAGGCTCAGACTTCAGAGACATAAAGGAGTGGTAGGTGGGCCAGGAAGAGCTGGGATTAGCCTGGGCCCACCTGCCTGGAGGA

Downstream sequence

GAACCAGACCCAAAAGATCAGACTTTCCGAGAATGAGTCCAAATGGGTTGAGAGAAAGGGAGCACACACTGCAAATCTGCAAGGATGAAGTCAGTTACCC