VISDB Viral Integration Site DataBase

VIS ID

TVIS30002136

Fusion event

HIV-GOLGA3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.33

Reference genome

Start

End

133346487/132769901 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-32-5p ; hsa-mir-484 ; hsa-mir-99a-5p ; hsa-mir-92a-3p ; hsa-mir-450a-1-3p ; hsa-mir-218-5p ; hsa-mir-4282 ; hsa-mir-7856-5p ; hsa-mir-4477b ; hsa-mir-8064 ; hsa-mir-6814-5p ; hsa-mir-3613-3p ; hsa-mir-651-3p ; hsa-mir-137 ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-25-3p ; hsa-mir-363-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-877-3p ; hsa-mir-3186-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-4283 ; hsa-mir-4437 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4284 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6499-5p ; hsa-mir-383-3p ; hsa-mir-6813-5p ; hsa-mir-6085 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4649-3p ; hsa-mir-490-3p ; hsa-mir-6087 ; hsa-mir-7160-5p

Nearest miRNA

hsa-let-7i/Upstream/187840;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/5373, chr12-CpG: 26/Downstream/3176

Upstream sequence

GATATTCCATCATTCCCACTTCTGCCCACAAGAACAAAATAATTCAAACTTTATGCACTGAAGTAACTCTGGAAGGTAGAAGTGCCGGGAGAGTCCCTTG

Downstream sequence

GAGATAAAAAAACCTCAACAATAAAAAAAAGCAATTTAAAAATCCAACTGCAgccgggggcggtggttcacgcctataattccagcactttgggaggctg