Basic Information
VIS ID
TVIS30002138
Fusion event
HIV-EEF1DP3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
32472484/31898347 (Hg38)
End
32472484/31898347 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
EEF1DP3
Nearest miRNA
hsa-mir-2276/Upstream/7735843; hsa-mir-1267/Downstream/7765687;
Nearest TSS
ENST00000623511/Upstream/51506; ENST00000490410/Downstream/47479;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/51210, chr13-CpG: 33/Downstream/54398
Upstream sequence
TGTAACAAATGAAAATGTTTTCAAGTATGATGATCAAAAGGAGTGAGTGTCTCCCTTAACATCCTATAAATATTTTAATACGTGGTCCAGTCCATCTTCC
Downstream sequence
TCACTCACTCTGCAGTGTTTGATCCATTACCCAAGGTAACTGAGGGCCCACCACCTACTGGGTGCTCCATGAACCCCAGGCAAACCACAGGCAAGTCAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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