VISDB Viral Integration Site DataBase

VIS ID

TVIS30002147

Fusion event

HIV-DGKH integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr13

Cytoband

q14.11

Reference genome

Start

End

42629687/42055551 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-3935 ; hsa-mir-656-3p ; hsa-mir-577 ; hsa-mir-1277-5p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-4798-3p ; hsa-mir-889-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-545-5p ; hsa-mir-3163 ; hsa-mir-4709-5p ; hsa-mir-4282 ; hsa-mir-4789-5p ; hsa-mir-466 ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-297 ; hsa-mir-3924 ; hsa-mir-568 ; hsa-mir-190a-3p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-5011-5p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-1305 ; hsa-mir-6794-3p ; hsa-mir-766-5p ; hsa-mir-4778-3p ; hsa-mir-1304-3p ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-1207-3p ; hsa-mir-4639-3p ; hsa-mir-3161 ; hsa-mir-6804-5p ; hsa-mir-513b-5p ; hsa-mir-4457 ; hsa-mir-125b-2-3p ; hsa-mir-3614-3p ; hsa-mir-6873-5p ; hsa-mir-5680 ; hsa-mir-421 ; hsa-mir-505-3p ; hsa-mir-7159-5p

Nearest miRNA

hsa-mir-2276/Upstream/487156; hsa-mir-1267/Downstream/2140578;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/6127, chr13-CpG: 84/Downstream/216166

Upstream sequence

GATAAGAGACATAATAAATAATTTACTAAACCTTTACATATAACTTAACGATGCCGTATTTTAAAGTATCTAAATTTAGAACTCTTTCACTTAGTTTAAG

Downstream sequence

TTTGCTTGTTTGCTGTTGTGGTAAAGAGGCAAAAGGTTATATGAAACTACCAGTATAAAGGACGTGGGGCCCCGTTCTGTTTCCAGGGTACAGTGTTTTT