Basic Information
VIS ID
TVIS30002150
Fusion event
HIV-SIAH3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.13
Reference genome
GRCh37/hg19
Start
46360066/45785931 (Hg38)
End
46360066/45785931 (Hg38)
Orient
+
Location type
Intronic
Target gene
SIAH3
miRNAs that regulate target gene
hsa-mir-4668-5p ; hsa-mir-5703 ; hsa-mir-4434 ; hsa-mir-4516 ; hsa-mir-1253 ; hsa-mir-4428 ; hsa-mir-6507-5p ; hsa-mir-6878-3p ; hsa-mir-502-5p ; hsa-mir-1200 ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-3670 ; hsa-mir-3653-5p ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-5193
Nearest miRNA
hsa-mir-2276/Upstream/1589731; hsa-mir-1267/Downstream/4210484;
Nearest TSS
ENST00000623511/Upstream/82803; ENST00000606351/Downstream/65805;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/71852, chr13-CpG: 51/Downstream/266388
Upstream sequence
TTCCCCAAGGTGAACAGTGTGTCTTCAGCTATGAAGGAACAAGCTGTGTTCCAAAATCCTGCTAGTGATGAGTCTGACTTATCCCTCAGTGTTAAGTATG
Downstream sequence
GGGAAGGAAACTAACTAGTATGTAGCATCTACTAAGTGTCAGCTGCTATGGAAAGGAGGtatttttaaaataattatttcatttaatttttCACAGAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate