Basic Information
VIS ID
TVIS30002155
Fusion event
HIV-ITM2B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
48823471/48249335 (Hg38)
End
48823471/48249335 (Hg38)
Orient
+
Location type
Intronic
Target gene
ITM2B
miRNAs that regulate target gene
hsa-mir-32-5p ; hsa-mir-320b ; hsa-mir-320a ; hsa-mir-186-5p ; hsa-mir-100-5p ; hsa-mir-99a-5p ; hsa-mir-25-3p ; hsa-let-7a-5p ; hsa-mir-95-5p ; hsa-mir-670-3p
Nearest miRNA
hsa-mir-2276/Upstream/4053135; hsa-mir-1267/Downstream/1747080;
Nearest TSS
ENST00000623511/Upstream/16132; ENST00000607866/Downstream/4540;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/15523, chr13-CpG: 106/Downstream/53988
Upstream sequence
tgatcatatagtgagtaatcttttgtgctaaacttctttcacttagcatgtttttgagattcagtcccgctggtgtgtgttattttgttcctttttattg
Downstream sequence
ctatctatttcatggtatgaatataccacaatttattcatcagttgatggatatttgggttgtttctagtttggggctagtatataaataatgatgctgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate